MEGA 11 – Molecular Evolutionary Genetics Analysis

MEGA 11

:: DESCRIPTION

MEGA （Molecular Evolutionary Genetics Analysis）is an integrated tool for automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, and testing evolutionary hypotheses.

::DEVELOPER

MEGA Team

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / MacOSX

:: DOWNLOAD

MEGA

:: MORE INFORMATION

Citation

Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S.

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, and Kumar S (2011)
MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods.
Molecular Biology and Evolution (2011)doi: 10.1093/molbev/msr121 First published online: May 4, 2011

Hands On Genetics 2.6 – Interactive Education Programs of Genetics

Hands On Genetics 2.6

:: DESCRIPTION

Hands On Genetics is a suite of interactive programs covering a wide range of topics in genetics.
Mendelian genetics:
SimpleGene, Mendelsim, SexLink, Punnett, GeneShare

Cytogenetics:
Meiosis

Molecular genetics:
Genetic molecules, PCR, Gelsim

Population genetics:
Popsim, Hardy-Weinberg, Fisher-Wright

::DEVELOPER

Hands On Genetics Editorial Board

:: SCREENSHOTS

:: REQUIREMENTS

Windows / MacOSX

:: DOWNLOAD

Hands On Genetics

:: MORE INFORMATION

Snurfle Meiosis 1.1 / Snurfle Meiosis and Genetics 2 – Diversity and Dihybrid Crosses

Snurfle Meiosis 1.1 / Snurfle Meiosis and Genetics 2

:: DESCRIPTION

Snurfle Meiosis : Snurfles, just like any other organism, must reproduce in order to continue as a species! But how does this happen? By the end of this game, you will understand how MEIOSIS and FERTILIZATION work to make offspring! You will also see how GENETIC characteristics are passed on through these processes and the connection between meiosis and genetics!

Snurfle Meiosis and Genetics 2 : When Snurfles reproduce, their offspring can have a lot of different traits (lots of diversity). But how? By the end of this game, you will understand how the processes of CROSSING OVER, INDEPENDENT ASSORTMENT, and RANDOM FERTILIZATION result in increased diversity of offspring! Also, you will learn how to perform a DIHYBRID CROSS!

::DEVELOPER

BioMan Biology

:: SCREENSHOTS

:: REQUIREMENTS

Web browser / iPad/ iPhone

:: DOWNLOAD

Snurfle Meiosis , Snurfle Meiosis and Genetics 2

:: MORE INFORMATION

Genetix 4.05 – Set of Population Genetics Programs

Genetix 4.05

:: DESCRIPTION

Genetix is a set of programs which computes several basic parameters of population genetics such as Nei’s D and H, Wright’s F-statistics (the Weir-Cockerham’s and Robertson-Hill’s estimators), and linkage disequilibrium D according to Black & Krafsur. For each of them, the distribution of the parameter values under the null hypothesis (for instance Hardy-Weinberg equilibrium for Fstats) is generated by the appropriate resampling scheme of the relevant objects (e.g. alleles between individuals in the case of Fis) using permutations.

::DEVELOPER

Genetix team

:: SCREENSHOTS

::REQUIREMENTS

Windows

:: DOWNLOAD

Genetix

:: MORE INFORMATION

visPIG 1.1 – Visual Plotting Interface for Genetics

visPIG 1.1

:: DESCRIPTION

visPIG is a web application to produce multi-track, multi-scale, multi-region plots of genetic data.

::DEVELOPER

Marc Henrion

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/ MacOsX/Linux
R

:: DOWNLOAD

visPIG

:: MORE INFORMATION

Citation:

visPIG–a web tool for producing multi-region, multi-track, multi-scale plots of genetic data.
Scales M, Jäger R, Migliorini G, Houlston RS, Henrion MY.
PLoS One. 2014 Sep 10;9(9):e107497. doi: 10.1371/journal.pone.0107497. eCollection 2014.

RedLynx v1.1 – Population Genetics Simulator

RedLynx v1.1

:: DESCRIPTION

RedLynx is a population genetics simulator built entirely in JavaScript. It runs entirely withing a web browser and is extremely helpful when teaching population genetics and evolution. It can simulate genetic drift, selection, dominance, mutation, and migration.

::DEVELOPER

Reed A. Cartwright

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

genio 1.0.12 – Genetics Input/Output Functions

genio 1.0.12

:: DESCRIPTION

The genio (GENetics I/O) package provides easy-to-use and efficient readers and writers for formats in genetics research.

::DEVELOPER

The Ochoa Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ MacOsX / Windows
R

:: DOWNLOAD

genio

:: MORE INFORMATION

GENtle2 0.7.0 – Web-Based DNA Editor for Synthetic Biology

GENtle2 0.7.0

:: DESCRIPTION

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.

::DEVELOPER

Synbiota Inc.

:: SCREENSHOTS

:: REQUIREMENTS

Windows/ Linux / Mac OsX

:: DOWNLOAD

GENtle

:: MORE INFORMATION

Genepop 4.5 – Population Genetics Software Package

Genepop 4.5

:: DESCRIPTION

GENEPOP is a population genetics software package

::DEVELOPER

Michel Raymond (Raymond@isem.univ-montp2.fr) and Francois Rousset (Rousset@isem.univ-montp2.fr)

:: SCREENSHOTS

N/A

::REQUIREMENTS

Linux / Windows

:: DOWNLOAD

Genepop

:: MORE INFORMATION

Citation

Rousset, F., 2008.
Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux.
Mol. Ecol. Resources 8: 103-106.

Bugsville 1.0 – Simulates the Genetics of a Quantitative Character

Bugsville 1.0

:: DESCRIPTION

Bugsville simulates the genetics of a quantitative character. The user can breed ladybugs to estimate the heritability of spot number, then conduct a selective breeding experiment to see if the heritability multiplied by the selection differential predicts the response to selection.

::DEVELOPER

Jon C. Herron

:: SCREENSHOTS

:: REQUIREMENTS

MacOsX / Windows

:: DOWNLOAD

Bugsville

:: MORE INFORMATION