GNA 8.7.1.1 – Modelling & Simulation of Genetic Regulatory Networks

GNA 8.7.1.1

:: DESCRIPTION

GNA (Genetic Network Analyzer) is a computer tool for the qualitative modeling and simulation of genetic regulatory networks. GNA assists you in constructing a model of a genetic regulatory network using knowledge about regulatory interactions in combination with gene expression data. Moreover, it allows you to simulate the qualitative behavior of the network in response to external perturbations. The mathematical models created with GNA can be tested against observed properties of the network.

::DEVELOPER

Bruno Besson, Hidde de Jong, Pedro Monteiro, and Michel Page.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/MacOsx/Linux
  • Java

:: DOWNLOAD

 GNA

:: MORE INFORMATION

Citation

Methods Mol Biol. 2012;804:439-62. doi: 10.1007/978-1-61779-361-5_22.
Genetic network analyzer: a tool for the qualitative modeling and simulation of bacterial regulatory networks.
Batt G1, Besson B, Ciron PE, de Jong H, Dumas E, Geiselmann J, Monte R, Monteiro PT, Page M, Rechenmann F, Ropers D.

H. de Jong, J. Geiselmann, C. Hernandez, M. Page (2003),
Genetic Network Analyzer : Qualitative simulation of genetic regulatory networks,
Bioinformatics, 19(3):336-344

BioTapestry 7.1.2 – Genetic Regulatory Networks Tool

BioTapestry 7.1.2

:: DESCRIPTION

BioTapestry is an interactive tool for building, visualizing, and simulating genetic regulatory networks.BioTapestry is designed around the concept of a developmental network model, and is intended to deal with large scale models with consistency and clarity. It is capable of representing systems that exhibit increasing complexity over time.

::DEVELOPER

Shmulevich Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • JAVA

:: DOWNLOAD

BioTapestry ;  BioTapestry Viewer

:: MORE INFORMATION

Citation

BioTapestry: a tool to visualize the dynamic properties of gene regulatory networks.
Longabaugh WJ.
Methods Mol Biol. 2012;786:359-94. doi: 10.1007/978-1-61779-292-2_21.

NetBuilder 0.94 – Graphical Tool for Representing and Simulating Genetic Regulatory Networks

NetBuilder 0.94

:: DESCRIPTION

NetBuilder is an interactive graphical tool for representing and simulating genetic regulatory networks in multicellular organisms. Although the diagrams created in NetBuilder represent biological processes, the underlying concepts have their roots in electronic engineering.

::DEVELOPER

NetBuilder Development team

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 NetBuilder

:: MORE INFORMATION