:: DESCRIPTION
infocalc is a small script for calculating statistics that measure the ancestry information content of genetic markers.
::DEVELOPER
Rosenberg lab at Stanford University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Informativeness of genetic markers for inference of ancestry.
Rosenberg NA, Li LM, Ward R, Pritchard JK.
Am J Hum Genet. 2003 Dec;73(6):1402-22. Epub 2003 Nov 20.
:: DESCRIPTION
PowerMarker is a comprehensive set of statistical methods for genetic marker data analysis, designed especially for SSR/SNP data analysis. PowerMarker builds a powerful user interface around both new and traditional statistical methods for population genetic analysis.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2005 May 1;21(9):2128-9. Epub 2005 Feb 10.
PowerMarker: an integrated analysis environment for genetic marker analysis.
Liu K, Muse SV.
:: DESCRIPTION
MAPDISTO is a program for mapping genetic markers in experimental segregating populations like backcross, doubled haploids, single-seed descent. Its specificity is to propose recombination fraction estimates in case of segregation distortion. It can (1) compute and draw genetic maps easily and quickly through a graphical interface; (2) facilitate the analysis of marker data showing segregation distortion due to differential viability of gametes or zygotes.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Lorieux M (2012)
MapDisto: fast and efficient computation of genetic linkage maps.
Molecular Breeding, August 2012, Volume 30, Issue 2, pp 1231-1235
:: DESCRIPTION
MAGMA employs a multiobjective evolutionary algorithm to pick tag SNPs from a larger set of SNPs while balancing multiple objectives (e.g., cost and sensitivity).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2003 Jul 23;4:30. Epub 2003 Jul 23.
Evolutionary algorithms for the selection of single nucleotide polymorphisms.
Hubley RM, Zitzler E, Roach JC.
:: DESCRIPTION
wclique is a C++ program that helps select genetic or RH markers for framework mapping.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
EPISTACY is a SAS program designed to test all possible two-locus combinations for epistatic (interaction) effects on a quantitative trait using QTL-mapping data sets.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Holland (1998),
“EPISTACY: A SAS program for detecting two-locus epistatic interactions using genetic marker information“,
Journal of Heredity, 89:374-375.
:: DESCRIPTION
RELPAIR is a FORTRAN 77 program that infers the relationships of pairs of individuals based on genetic marker data, either within families or across an entire sample.
::DEVELOPER
the Center for Statistical Genetics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Epstein, M.P., Duren, W.L., and Boehnke, M. (2000)
Improved inference of relationships for pairs of individuals.
American Journal of Human Genetics 67:1219-1231.
:: DESCRIPTION
LCMT is a small program performing “combining” association test over multiple genetic markers.LCMT implements the “combining” method for the association test over multiple genetic markers. It optimally utilizes the information from those markers. It is preferred over several competing tests, such as the Bonferroni procedure, the permutation procedure, the traditional χ2 procedure, the regression procedure (Hotelling T2 test) and the haplotype-based test.
::DEVELOPER
:: SCREENSHOTS
Command Line
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
References
H zhou, L wei, X Xu, X Xu (2006) Combining association tests across multiple genetic markers in case-control studies
