EINVis 20121021 – A Visualization tool for Analyzing and Exploring Genetic Interactions in Large-scale Association Studies

EINVis 20121021

:: DESCRIPTION

EINVis (Epistasis Interaction Network Visualization) is ONLINE FREE software that allows users to visualize and explore the epistatic interaction networks. EINVis provides three different views: EIN Tree Ring View, EIN Matrix View, and LD Tree Ring View.

::DEVELOPER

Yubao Wu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows
Java Scripts

:: DOWNLOAD

EINVis

:: MORE INFORMATION

Citation

Genet Epidemiol. 2013 Nov;37(7):675-85. doi: 10.1002/gepi.21754. Epub 2013 Aug 11.
EINVis: a visualization tool for analyzing and exploring genetic interactions in large-scale association studies.
Wu Y1, Zhu X, Chen J, Zhang X.

PanGIA 3.0 – Analysis of Physical and Genetic Interactions to infer Genetic Module Maps

PanGIA 3.0

:: DESCRIPTION

PanGIA (Physical and Genetic Interaction Alignment) is a plugin designed to integrate physical and genetic interactions into hierarchical module maps.

::DEVELOPER

PanGIA team

:: SCREENSHOTS

:: REQUIREMENTS

Windows/Linux/MacOsX
Java
Cytoscape

:: DOWNLOAD

PanGIA

:: MORE INFORMATION

Citation

F1000Res. 2014 Jul 1;3:150. doi: 10.12688/f1000research.4546.1. eCollection 2014.
Porting and using PanGIA for Cytoscape 3: challenges and solutions.
Welker D, Demchak B

SIXPAC 1.0.2 – Search Engine for Genetic Interactions

SIXPAC 1.0.2

:: DESCRIPTION

SIXPAC is an efficient, scalable search algorithm that finds synergy between pairs of physically unlinked SNPs (genome-wide) in large case-control datasets.

::DEVELOPER

Snehit Prabhu at Itsik Pe’er Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / Mac OsX
Java

:: DOWNLOAD

SIXPAC

:: MORE INFORMATION

Citation:

Genome Res. 2012 Nov;22(11):2230-40. doi: 10.1101/gr.137885.112.
Ultrafast genome-wide scan for SNP-SNP interactions in common complex disease.
Prabhu S, Pe’er I.