Tag: Gene Interaction

FTGI – Finding a Three-way Gene Interaction

FTGI

:: DESCRIPTION

FTGI (Fast finding Three-way Gene Interactions) is a fast method for finding a three-way gene interaction,i.e. two interacting genes in expression under the genotypes of another gene, given a dataset in which expressions and genotypes are measured at once for each individual.

::DEVELOPER

Mitsunori, Kayano, Ph.D.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/Windows

:: DOWNLOAD

 FTGI

 :: MORE INFORMATION

Citation

Bioinformatics. 2009 Nov 1;25(21):2735-43. doi: 10.1093/bioinformatics/btp531. Epub 2009 Sep 7.
Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data.
Kayano M1, Takigawa I, Shiga M, Tsuda K, Mamitsuka H.

SNPsyn 1.2b – Gene Interaction Analytics Application

SNPsyn 1.2b

:: DESCRIPTION

SNPsyn is an exploratory gene interaction analytics application. It helps you discover and quantify the synergy of SNP-SNP interactions in case-control Genome-Wide Association Studies (GWAS) data.

::DEVELOPER

BioLab , University of Ljubljana

:: SCREENSHOTS

:: REQUIREMENTS

  • Any Web Browser

:: DOWNLOAD

 SNPsyn

:: MORE INFORMATION

Citation:

T. Curk, G. Rot, and B. Zupan (2011).
SNPsyn: detection and exploration of SNP–SNP interactions.
Nucl. Acids Res. 39(suppl 2): W444-W449, doi:10.1093/nar/gkr321.