MultiWaver 2.0 – Modeling Discrete and Continuous Gene Flow to reconstruct Complex Population Admixtures

MultiWaver 2.0

:: DESCRIPTION

MultiWaver series software was designed to infer population admixture history in case of various and complex scenarios.

::DEVELOPER

Population Genomics Group (PGG)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

MultiWaver

:: MORE INFORMATION

Citation

Ni X, Yuan K, Liu C, Feng Q, Tian L, Ma Z, Xu S.
MultiWaver 2.0: modeling discrete and continuous gene flow to reconstruct complex population admixtures.
Eur J Hum Genet. 2019 Jan;27(1):133-139. doi: 10.1038/s41431-018-0259-3. Epub 2018 Sep 11. PMID: 30206356; PMCID: PMC6303267.

CDFISH 0.55 – Landscape Genetics program to Simulate Gene Flow

CDFISH 0.55

:: DESCRIPTION

CDFISH (Cost Distance FISHeries) is a landscape genetics program to simulate gene flow in complex riverscapes under a wide range of environmental scenarios for aquatic organisms. The spatially-explicit program implements individual-based population modeling with Mendelian inheritance and a k-allele mutation model on a stream network with an underlying resistance surface (e.g. partial barriers).

::DEVELOPER

the Computational Ecology Lab, The University of Montana

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux

:: DOWNLOAD

CDFISH

:: MORE INFORMATION

Citation

Erin L. Landguth, C. C. Muhlfeld, G. Luikart
CDFISH: an individual-based, spatially-explicit, landscape genetics simulator for aquatic species in complex riverscapes
Conservation Genetics Resources March 2012, Volume 4, Issue 1, pp 133-136

COALGF Calculator 1.0 – Computing Probabilities of Gene Tree Histories Given Species Trees Under the Coalescent Process with Gene Flow

COALGF Calculator 1.0

:: DESCRIPTION

COALGF Calculator is a C program that will compute the probability distribution of gene tree histories and gene tree topolgies for a fixed three-taxon species tree under the coalescent model with gene flow between both pairs of sister population.

::DEVELOPER

Laura S. Kubatko

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

COALGF Calculator

:: MORE INFORMATION

Citation

Distribution of coalescent histories under the coalescent model with gene flow.
Tian Y, Kubatko LS.
Mol Phylogenet Evol. 2016 Dec;105:177-192. doi: 10.1016/j.ympev.2016.08.024.