Geptop 2.0
:: DESCRIPTION
Geptop is a webserver, which first provides a platform to detect essential gene sets over bacterial species, by comparing orthology and phylogeny of query protein sets with essential gene datasets determined experimentally (from DEG database).
::DEVELOPER
Microbe and Drug Bioinformatics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/ Linux
- Python
- BioPython
:: DOWNLOAD
:: MORE INFORMATION
Citation
Wen QF, Wei W, Guo FB.
Geptop 2.0: Accurately Select Essential Genes from the List of Protein-Coding Genes in Prokaryotic Genomes.
Methods Mol Biol. 2022;2377:423-430. doi: 10.1007/978-1-0716-1720-5_23. PMID: 34709630.
PLoS One. 2013 Aug 15;8(8):e72343. doi: 10.1371/journal.pone.0072343. eCollection 2013.
Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny.
Wei W1, Ning LW, Ye YN, Guo FB.