DynaDup 2.3.2 – Inferring Optimal Species Trees under Gene Duplication and Loss

DynaDup 2.3.2

:: DESCRIPTION

DynaDup is a Dynamic Programing based Java application for building species trees from gene trees minimizing gene duplication and gene duplication and loss.

::DEVELOPER

The Warnow Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux /Windows/MacOsX
Java

:: DOWNLOAD

DynaDup

:: MORE INFORMATION

Citation

Pac Symp Biocomput. 2013:250-61.
Inferring optimal species trees under gene duplication and loss.
Bayzid MS1, Mirarab S, Warnow T.

PHYLDOG 2.0beta – Organism and Gene PHYlogenies Modeling Gene Duplications and Losses

PHYLDOG 2.0beta

:: DESCRIPTION

Phyldog is a program made to simultaneously build gene and species trees when gene families have undergone duplications and losses.

::DEVELOPER

Bastien Boussau

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Boost libraries
Bio++

:: DOWNLOAD

PHYLDOG

:: MORE INFORMATION

Citation:

Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112.
Genome-scale coestimation of species and gene trees.
Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.