netVar – Using Gene Co-Expression Networks for Variable Selection

netVar

:: DESCRIPTION

netVar is a network-based method that uses the gene connectivity in the gene co-expression network for variable selection.

::DEVELOPER

the Liu Lab , The UT Health Science Center at Houston.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ MacOsX / Windows
MatLab

:: DOWNLOAD

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 May 20;15(1):153.
Improving the sensitivity of sample clustering by leveraging gene co-expression networks in variable selection.
Wang Z, Lucas FA, Qiu P, Liu Y.

MotifNetwork – Analyze Promoter Motifs over Arabidopsis Gene Co-expression Network

MotifNetwork

:: DESCRIPTION

MotifNetwork is a program to analyze promoter motifs over Arabidopsis gene co-expression network.

::DEVELOPER

Dinesh-Kumar Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

:: MORE INFORMATION

Citation

Ma S, Shah S, Bohnert HJ, Snyder M and Dinesh-Kumar SP. (2013)
Incorporating motif analysis into gene co-expression networks reveals novel modular expression pattern and new signaling pathways.
PLoS Genetics 9(10):e1003840.