DeClone – Evolutionary Scenarios for Gene Adjacencies in a Gibbs-Boltzmann framework

DeClone

:: DESCRIPTION

DeClone is a software for the prediction of ancestral adjacencies in reconciled gene trees.

::DEVELOPER

Computational Methods for Paleogenomics and Comparative Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

:: MORE INFORMATION

Citation

Chauve C, Ponty Y, Zanetti J.
Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach.
BMC Bioinformatics. 2015;16 Suppl 19(Suppl 19):S6. doi: 10.1186/1471-2105-16-S19-S6. Epub 2015 Dec 16. PMID: 26696141; PMCID: PMC4686788.

DeCoStar – Reconstructing Parsimonious histories of Gene Adjacencies

DeCoStar

:: DESCRIPTION

DeCoSTAR is a program designed to study the evolution of links between genes (i.e., adjacencies) .

::DEVELOPER

Computational Methods for Paleogenomics and Comparative Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

:: MORE INFORMATION

Citation

Duchemin W, Anselmetti Y, Patterson M, Ponty Y, Bérard S, Chauve C, Scornavacca C, Daubin V, Tannier E.
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies.
Genome Biol Evol. 2017 May 1;9(5):1312-1319. doi: 10.1093/gbe/evx069. PMID: 28402423; PMCID: PMC5441342.