Tag: GEMINI

GemiNI – Network based integration of Gene Expression profiles with miRNA Expression Profiles

GemiNI

:: DESCRIPTION

GemiNI /dChip-GemiNi (Gene and miRNA Network-based Integration) is a web server which is an integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops

::DEVELOPER

Mehmet Kemal Samur

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 GemiNI

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Sep 1;40(17):e135.
Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers.
Yan Z, Shah PK, Amin SB, Samur MK, Huang N, Wang X, Misra V, Ji H, Gabuzda D, Li C.

GEMINI – The Genomic Search Engine

GEMINI

:: DESCRIPTION

GEMINI is an open-source bioinformatics tool and website written in python to facilitate near-neighbor searching of genomic data.

::DEVELOPER

Flaherty Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

GEMINI

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2016 Feb 24;17:102. doi: 10.1186/s12859-016-0934-8.
GEMINI: a computationally-efficient search engine for large gene expression datasets.
DeFreitas T, Saddiki H, Flaherty P

GEMINI 0.30.2 – Integrative Exploration of Genetic Variation and Genome Annotations

GEMINI 0.30.2

:: DESCRIPTION

Gemini (GEnome MINIing) is a powerful framework for exploring genetic variation in the context of the wealth of existing genome annotations that are available for the human genome. By integrating diverse annotations with genetic variation in the now standard VCF format, researchers have an single system for prioritizing variants in studies of human disease.

::DEVELOPER

The Quinlan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Python

:: DOWNLOAD

 GEMINI 

:: MORE INFORMATION

Citation:

Paila U, Chapman BA, Kirchner R, Quinlan AR (2013)
GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations.
PLoS Comput Biol 9(7): e1003153. doi:10.1371/journal.pcbi.1003153

GEMINI – Gene Expression and Metabolism Integrated for Network Inference

GEMINI

:: DESCRIPTION

GEMINI produces a regulatory network that is simultaneously consistent with observed gene knockout phenotypes, gene expression data, and the corresponding metabolic network.

::DEVELOPER

The Hood-Price Lab for Systems Biomedicine

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ WIndows/ MacOsX
  • Matlab

:: DOWNLOAD

GEMINI

:: MORE INFORMATION