Chromatin Cutter 1.00 – Simulates the distribution of DNA in a Gel Electrophoresis Study of Yeast Chromatin cut by Enzymes

Chromatin Cutter 1.00

:: DESCRIPTION

Chromatin Cutter simulates the distribution of DNA in a gel electrophoresis study of Yeast chromatin cut by enzymes. It lets you specify the fraction of nucleosomes that are unwrapped (wrapped ones have inaccessible DNA). It lets you specify the variance in the distribution of nucleosomes around their mean distance. It lets you specify the number of cuts per unit length (enzyme concentration). It plots the effects of these on the log number of base pairs, which matches the gel electrophoresis mass distribution.

::DEVELOPER

CISMM (Computer Integrated Systems for Microscopy and Manipulation)

:: SCREENSHOTS

:: REQUIREMENTS

Windows

:: DOWNLOAD

Chromatin Cutter

:: MORE INFORMATION

Make2D-DB II 3.10.2 – Gel Electrophoresis 2D-PAGE Databases

Make2D-DB II 3.10.2

:: DESCRIPTION

Make2D-DB II is an environment to create, convert, publish, interconnect and keep up-to-date two-dimensional gel electrophoresis (2D-PAGE) databases. It converts data from various formats into a relational format. The tool offers the possibility to automatically update data related to numerous external data resources in a highly consistent manner. It is also possible with this tool to dynamically interconnect several remote databases or projects to form a virtual global database accessible from one single entry point.

::DEVELOPER

The SIB Swiss Institute of Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

Make2D-DB II

:: MORE INFORMATION

Citation

Mostaguir K, Hoogland C, Binz PA, Appel RD.
The Make 2D-DB II package: conversion of federated two-dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases.
Proteomics. 2003 Aug;3(8):1441-4.

GelyMac – Calculate DNA Fragment sizes from Gel Electrophoresis Migration data

GelyMac

:: DESCRIPTION

GelyMac is a program developed at Reed College which calculates DNA fragment sizes from gel electrophoresis migration data. GelyMac runs on a Macintosh computer only. The first step in using the GelyMac program is to enter data for a known marker. Both the distances traveled and the fragment sizes are entered. Then the distances migrated by up to 19 sets of DNA fragments are entered, and the program calculates the sizes of these fragments using a cubic-spline interpolation. These results are displayed on the screen and may also be printed.

::DEVELOPER

Biology Department, Reed College

:: SCREENSHOTS

N/A

::REQUIREMENTS

MacOsX

:: DOWNLOAD

GelyMac

:: MORE INFORMATION

Citation

Peter J. Russell, Joshua M. Doenias and Steven J. Russell
GELYMAC: a Macintosh application for calculating DNA fragment size from gel electrophoresis migration data
Comput Appl Biosci (1991) 7 (2): 265-266.