ELM / iELM 1.0 – Investigation of Functional Sites in Protein Sequences with Eukaryotic Linear Motif database

ELM / iELM 1.0

:: DESCRIPTION

The ELM (Eukaryotic Linear Motif) resource  provides the biological community with a comprehensive database of known experimentally validated motifs, and an exploratory tool to discover putative linear motifs in user-submitted protein sequences.

The iELM (interactions of Eukaryotic Linear Motif) web server provides a resource for predicting the function and positional interface for a subset of interactions mediated by short linear motifs (SLiMs).

::DEVELOPER

Gibson Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Holger Dinkel et al.
ELM — the database of eukaryotic linear motifs
Nucl. Acids Res. (2012) 40 (D1): D242-D251.

iELM – a web server to explore short linear motif-mediated interactions.
Weatheritt RJ, Jehl P, Dinkel H, Gibson TJ. (2012).
Nucleic Acids Res. 2012 Jul

Rsite2 – Predict the Functional Sites of ncRNAs

Rsite2

:: DESCRIPTION

Rsite2 is a secondary structure based computational method to predict the functional sites of noncoding RNAs (ncRNAs), which represent a big class of RNA molecules that show critical regulatory functions in a variety of biological processes.

::DEVELOPER

the Cui Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Windows/Linux
  • Python

:: DOWNLOAD

Rsite2

:: MORE INFORMATION

Citation

Zeng P, Cui Q.
Rsite2: an efficient computational method to predict the functional sites of noncoding RNAs.
Sci Rep. 2016 Jan 11;6:19016. doi: 10.1038/srep19016. PMID: 26751501; PMCID: PMC4707467.

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