MISIM 2.0 – miRNA Functional Similarity Measuring

MISIM 2.0

:: DESCRIPTION

MISIM is a tool for the miRNA functional similarity measuring and network construction. Given a miRNA list, MISIM measures the pairwise functional similarity of the given miRNAs. MISIM is also able to generate a miRNA functional network according to the calculated MISIM similarity coefficients for given miRNAs.

::DEVELOPER

the Cui Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

MISIM

:: MORE INFORMATION

Citation

Li J, Zhang S, Wan Y, Zhao Y, Shi J, Zhou Y, Cui Q.
MISIM v2.0: a web server for inferring microRNA functional similarity based on microRNA-disease associations.
Nucleic Acids Res. 2019 Jul 2;47(W1):W536-W541. doi: 10.1093/nar/gkz328. PMID: 31069374; PMCID: PMC6602518.

simDEF – Definition-based Semantic Similarity Measure of GO Terms for Functional Similarity Analysis of Genes

simDEF

:: DESCRIPTION

simDEF is an efficient method for measuring semantic similarity of GO terms using their GO definitions.

::DEVELOPER

Beiko lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

  simDEF

:: MORE INFORMATION

Citation:

simDEF: Definition-based Semantic Similarity Measure of Gene Ontology Terms for Functional Similarity Analysis of Genes.
Pesaranghader A, Matwin S, Sokolova M, Beiko RG.
Bioinformatics. 2015 Dec 26. pii: btv755.