CAFS 1.0 – Cluster of Functional Shifts

CAFS 1.0

:: DESCRIPTION

CAFS (Clustering Analysis of Functional Shifts / Clusterfunc) is a simple and fast method for Clustering functionally divergent genes by Functional Category. The program analyses alignments and provides the user with the best putative sites under functional divergence.

::DEVELOPER

Dr Mario Fares

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX

:: DOWNLOAD

CAFS

:: MORE INFORMATION

Citation

Caffrey BE, Williams TA, Jiang X, Toft C, Hokamp K, et al. (2012)
Proteome-wide analysis of functional divergence reveals the molecular basis of ecological adaptations in bacteria .
PLoS ONE 7(4): e35659. doi:10.1371/journal.pone.0035659

UVPAR – Fast Detection of Functional Shifts in Duplicate Genes

UVPAR

:: DESCRIPTION

UVPAR is a program designed to quickly test for changes in the functional constraints of duplicate genes.

::DEVELOPER

Bioinformatics Unit, Instituto de Biomedicina de Valencia (CSIC) / Universidad de Valencia

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux

:: DOWNLOAD

UVPAR

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2006 Mar 28;7:174.
UVPAR: fast detection of functional shifts in duplicate genes.
Arnau V1, Gallach M, Lucas JI, Marín I.

FishTaco 1.1.3 – Linking Taxonomic and Functional Shifts in the Microbiome

FishTaco 1.1.3

:: DESCRIPTION

FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework, aiming to identify the taxa that are driving the functional shifts we observe in microbiomes of different individuals or disease states.

::DEVELOPER

the Borenstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Python

:: DOWNLOAD

FishTaco

:: MORE INFORMATION

Citation

Cell Host Microbe. 2017 Feb 8;21(2):254-267. doi: 10.1016/j.chom.2016.12.014.
Systematic Characterization and Analysis of the Taxonomic Drivers of Functional Shifts in the Human Microbiome.
Manor O, Borenstein E.