ANAT 3.0 – Inference and Analysis of Functional Networks of Proteins

ANAT 3.0

:: DESCRIPTION

ANAT (Advanced Network Analysis Tool) , is an all-in-one resource that provides access to up-to-date large-scale physical association data in several organisms, advanced algorithms for network reconstruction, and a number of tools for exploring and evaluating the obtained network models

::DEVELOPER

Prof. Roded Sharan

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX
Java
Cytoscape

:: DOWNLOAD

ANAT

:: MORE INFORMATION

Citation

Signorini LF, Almozlino T, Sharan R.
ANAT 3.0: framework for elucidating functional protein subnetworks using graph-theoretic and machine learning approaches.
BMC Bioinformatics. 2021 Oct 27;22(1):526. doi: 10.1186/s12859-021-04449-1. PMID: 34706638.

ANAT: A Tool for Constructing and Analyzing Functional Protein Networks.
N. Yosef, E. Zalckvar, A. D. Rubinstein, M. Homilius, N. Atias, L. Vardi, I. Berman, H. Zur, A. Kimchi, E. Ruppin and R. Sharan
Sci. Signal. 4, pl1 (2011).

NetResponse 1.53.2 – Probabilistic algorithms for Functional Network Analysis

NetResponse 1.53.2

:: DESCRIPTION

NetResponse provides probabilistic tools for functional analysis of interaction networks, and provides a global map of network activation patterns across versatile contexts.

::DEVELOPER

Turku Data Science Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
R package
BioConductor

:: DOWNLOAD

NetResponse

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Nov 1;26(21):2713-20. doi: 10.1093/bioinformatics/btq500. Epub 2010 Sep 2.
Global modeling of transcriptional responses in interaction networks.
Lahti L, Knuuttila JE, Kaski S.

Fenrir – Tissue-specific Enhancer Functional Networks for Associating Distal Regulatory Regions to disease

Fenrir

:: DESCRIPTION

FENRIR integrates tissue-specific enhancer networks with disease GWAS or genes and reprioritizes ~48,000 enhancers.

::DEVELOPER

Troyanskaya Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Chen X, Zhou J, Zhang R, Wong AK, Park CY, Theesfeld CL, Troyanskaya OG.
Tissue-specific enhancer functional networks for associating distal regulatory regions to disease.
Cell Syst. 2021 Mar 3:S2405-4712(21)00041-7. doi: 10.1016/j.cels.2021.02.002. Epub ahead of print. PMID: 33689683.