ANAT 20180308 – Inference and Analysis of Functional Networks of Proteins

ANAT 20180308

:: DESCRIPTION

ANAT (Advanced Network Analysis Tool) , is an all-in-one resource that provides access to up-to-date large-scale physical association data in several organisms, advanced algorithms for network reconstruction, and a number of tools for exploring and evaluating the obtained network models

::DEVELOPER

Prof. Roded Sharan

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 ANAT

:: MORE INFORMATION

Citation

ANAT: A Tool for Constructing and Analyzing Functional Protein Networks.
N. Yosef, E. Zalckvar, A. D. Rubinstein, M. Homilius, N. Atias, L. Vardi, I. Berman, H. Zur, A. Kimchi, E. Ruppin and R. Sharan
Sci. Signal. 4, pl1 (2011).

SoyFN – Soybean(Glycine max) Functional Network

SoyFN

:: DESCRIPTION

SoyFN is a comprehensive web tool about soybean functional gene network (SoyFGN) and microRNA functional network (SoymiRFN).

::DEVELOPER

NClab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

SoyFN: a knowledge database of soybean functional networks.
Xu Y, Guo M, Liu X, Wang C, Liu Y.
Database (Oxford). 2014 Mar 10;2014:bau019. doi: 10.1093/database/bau019.

NetResponse 1.21.0 – Probabilistic algorithms for Functional Network Analysis

NetResponse 1.21.0

:: DESCRIPTION

NetResponse provides probabilistic tools for functional analysis of interaction networks, and provides a global map of network activation patterns across versatile contexts.

::DEVELOPER

Leo Lahti

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • R package
  • BioConductor

:: DOWNLOAD

 NetResponse

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Nov 1;26(21):2713-20. doi: 10.1093/bioinformatics/btq500. Epub 2010 Sep 2.
Global modeling of transcriptional responses in interaction networks.
Lahti L, Knuuttila JE, Kaski S.

mouseMAP – Tissue-specific Functional Networks for the Laboratory Mouse

mouseMAP

:: DESCRIPTION

MouseMAP is an interface that allows browsing networks of different tissues and the comparison between them.

::DEVELOPER

Laboratory for Bioinformatics and Functional Genomics

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • java

:: DOWNLOAD

 mouseMAP

:: MORE INFORMATION

Citation

Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.
A genomewide functional network for the laboratory mouse.
PLoS Comput Biol. 2008 Sep 26;4(9):e1000165.