FunctionSIM – A Sequencing Simulator for Functional Metagenomics

FunctionSIM

:: DESCRIPTION

FunctionSIM is a bioinformatics tool to generate microbial DNA sequences. As standalone software it allows users to simulate metagenomic sequence datasets that can be used as standardized test data for planning metagenomic projects or for benchmarking software in functional metagenomic analysis.

::DEVELOPER

Lingling An

:: SCREENSHOTS

FunctionSIM

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Java

:: DOWNLOAD

 FunctionSIM

:: MORE INFORMATION

deFUME 1.0 – Dynamic Exploration of Functional Metagenomics Sequencing Data

deFUME 1.0

:: DESCRIPTION

deFUME is an easy-to-use web-server for trimming, assembly and functional annotation of Sanger sequencing data derived from functional selection experiments.

::DEVELOPER

deFUME team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 deFUME

:: MORE INFORMATION

Citation

deFUME: Dynamic exploration of functional metagenomic sequencing data.
van der Helm E, Geertz-Hansen HM, Genee HJ, Malla S, Sommer MO.
BMC Res Notes. 2015 Jul 31;8:328. doi: 10.1186/s13104-015-1281-y.