ChroMoS – SNP Classification, Prioritization and Functional Interpretation

ChroMoS

:: DESCRIPTION

ChroMoS (Chromatin Modified SNPs) combines genetic and epigenetic data to facilitate SNP classification, prioritization and prediction of their functional effect.

::DEVELOPER

Bioinformatics and Next Generation Sequencing Group; Max Planck Institute of Immunobiology and Epigenetics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation.
Barenboim M, Manke T.
Bioinformatics. 2013 Sep 1;29(17):2197-8. doi: 10.1093/bioinformatics/btt356.

Seq2Ref 1.2 – Facilitate Functional Interpretation

Seq2Ref 1.2

:: DESCRIPTION

Seq2Ref (Sequences to References ) is a web server designed to facilitate functional interpretation by retrieving and ranking the reference proteins in the BLAST result.

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Li W, Cong Q, Kinch LN, Grishin NV. (2013)
“Seq2Ref: a web server to facilitate functional interpretation“.
BMC Bioinformatics 14: 30 PMID: 23356573

SENT – Functional Interpretation tool based on Literature Analysis

SENT

:: DESCRIPTION

SENT (semantic features in text), is a web-based tool to brings structure and semantics to a list of genes by means of literature analysis. It takes a list of genes given as input and returns a collection of functionally related groups along with a list of words that provide them with a functional description.

::DEVELOPER

SENT team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W153-9. Epub 2009 May 20.
SENT: semantic features in text.
Vazquez M, Carmona-Saez P, Nogales-Cadenas R, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.