Tag: Functional Genomic Data

AlleleHMM – Find Allele-specific Signal in distributed Functional Genomic data

AlleleHMM

:: DESCRIPTION

The key goal of AlleleHMM is to identify allele-specific blocks of signal in distributed functional genomic data assuming that contiguous genomic regions share correlated allele-specific events.

::DEVELOPER

Danko Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux / MacOsX
  • Python

:: DOWNLOAD

AlleleHMM

:: MORE INFORMATION

Citation

Chou SP, Danko CG.
AlleleHMM: a data-driven method to identify allele specific differences in distributed functional genomic marks.
Nucleic Acids Res. 2019 Jun 20;47(11):e64. doi: 10.1093/nar/gkz176. PMID: 30918970; PMCID: PMC6582321.

GeNemo – Web-based Search Engine for Functional Genomic Data

GeNemo

:: DESCRIPTION

GeNemo is a search engine for functional genomic data. GeNemo searches user-input data against online functional genomic datasets, including the entire collection of ENCODE and mouse ENCODE datasets

::DEVELOPER

Zhong Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

GeNemo: a search engine for web-based functional genomic data.
Zhang Y, Cao X, Zhong S.
Nucleic Acids Res. 2016 Jul 8;44(W1):W122-7. doi: 10.1093/nar/gkw299.

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