popkin 1.3.8 – Estimate Kinship and FST under Arbitrary Population Structure

popkin 1.3.8

:: DESCRIPTION

The popkin (population kinship) R package estimates the kinship matrix of individuals and FST from their biallelic genotypes. Our estimation framework is the first to be practically unbiased under arbitrary population structures.

::DEVELOPER

The Ochoa Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ MacOsX / Windows
R

:: DOWNLOAD

popkin

:: MORE INFORMATION

Citation

Ochoa, Alejandro, and John D. Storey. 2016b.
“FST And Kinship for Arbitrary Population Structures II: Method of Moments Estimators.”
bioRxiv doi:10.1101/083923.

BAYESFST – Bayesian Estimation of Coancestry Coefficient FST

BAYESFST

:: DESCRIPTION

BAYESFST , Bayesian estimation of the coancestry coefficient F_ST

::DEVELOPER

Department of Mathematics and Statistic , The University of Reading

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows
R Package
C Compiler

:: DOWNLOAD

BAYESFST

:: MORE INFORMATION

Citation:

Beaumont, Balding (2004),
“Identifying adaptive genetic divergence among populations from genome scans“,
Molecular Ecology, 13:969-980.