FALP 1.06 – Calculation of the Gumbel Parameters for Frameshift Sequence Alignment

FALP 1.06

:: DESCRIPTION

FALP calculates the statistical parameters in the modified Gumbel distribution for gapped alignment with frameshifts.

::DEVELOPER

Spouge Research Group

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

 FALP

:: MORE INFORMATION

Citation

ALP & FALP: C++ Libraries for pairwise local alignment E-values.
Sheetlin S, Park Y, Frith MC, Spouge JL.
Bioinformatics. 2015 Oct 1. pii: btv575.

Frameshift alignment: statistics and post-genomic applications.
Sheetlin SL, Park Y, Frith MC, Spouge JL.
Bioinformatics. 2014 Aug 28. pii: btu576.

FSFinder 2.0 – Predict Frameshifting in Genomic Sequences

FSFinder 2.0

:: DESCRIPTION

FSFinder (Frameshift Signal Finder) is a software that searches the genomic sequences or mRNA sequences for frameshifting sites.FSFinder is capable of finding -1 frameshift sites for most known genes and +1 frameshift sites for two genes: protein chain release factor (prfB ) and ornithine decarboxylase antizyme (oaz ).

::DEVELOPER

Biocomputing Lab. School of Computer Science and Engineering Inha University, Inchon

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

FSFinder

:: MORE INFORMATION

Citation

Byun Y, Moon S, Han K.
A general computational model for predicting ribosomal frameshifts in genome sequences.
Comput Biol Med. 2007 Dec;37(12):1796-801. Epub 2007 Aug 2.