:: DESCRIPTION
RDDpred is a condition-specific RNA-editing prediction model from RNA-seq data.
::DEVELOPER
Bio & Health Informatics Lab , Seoul National University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data.
Kim MS, Hur B, Kim S.
BMC Genomics. 2016 Jan 11;17 Suppl 1:5. doi: 10.1186/s12864-015-2301-y.
:: DESCRIPTION
The web-server pSuc-Lys used to predict the lysine succinylation in protein.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach.
Jia J, Liu Z, Xiao X, Liu B, Chou KC.
J Theor Biol. 2016 Jan 22. pii: S0022-5193(16)00053-9. doi: 10.1016/j.jtbi.2016.01.020
:: DESCRIPTION
ABCRF is an R library to perform Approximate Bayesian Computation (ABC) model choice and parameter inference via random forests.
::DEVELOPER
The Computational Biology Institute (IBC)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2019 May 15;35(10):1720-1728. doi: 10.1093/bioinformatics/bty867.
ABC random forests for Bayesian parameter inference.
Raynal L, Marin JM, Pudlo P, Ribatet M, Robert CP, Estoup A
:: DESCRIPTION
HapForest implements a forest-based approach to accommodate the haplotype uncertainties and variable importance to sort out significant haplotypes and their interactions in genomewide case-control association studies.
::DEVELOPER
The Collaborative Center for Statistics in Science(C2S2)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
X. Chen, C.-T. Liu, M. Zhang and H.P. Zhang.
A forest-based approach to identifying gene and gene-gene interactions,
PNAS, 104: 19199–19203, 2007.
:: DESCRIPTION
SilVA (Latin for “forest”) is a tool for the automated harmfulness prediction of synonymous (silent) mutations within the human genome. SilVA bases its predictions on a number of features, including conservation, codon usage, splice sites, splicing enhancers and suppressors, and mRNA folding free energy. Given variants in a VCF file, SilVA will rank the rare synonymous variants according to their predicted harmfulness.
::DEVELOPER
Orion Buske and Michael Brudno
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Aug 1;29(15):1843-50. doi: 10.1093/bioinformatics/btt308.
Identification of deleterious synonymous variants in human genomes.
Buske OJ, Manickaraj A, Mital S, Ray PN, Brudno M.
