Forcefield_PTM – AMBER Forcefield Parameters for Post-translational Modifications

Forcefield_PTM

:: DESCRIPTION

Forcefield_PTM is a set of self-consistent AMBER forcefield parameters for frequently occurring post-translational modifications (PTMs).

::DEVELOPER

the Multi-scale Systems Engineering Laboratory (MSEL)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Forcefield_PTM: Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications.
Khoury GA, Thompson JP, Smadbeck J, Kieslich CA, Floudas CA.
J Chem Theory Comput. 2013 Dec 10;9(12):5653-5674.

Forcefield_NCAA – AMBER Forcefield Parameters for Non-canonical Amino Acids

Forcefield_NCAA / FFNCAA

:: DESCRIPTION

Forcefield_NCAA is a set of self-consistent AMBER forcefield parameters for non-canonical amino acids. It allows you to design and derivatize peptides containing NCAAs for use as drugs.

::DEVELOPER

the Multi-scale Systems Engineering Laboratory (MSEL)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family.
Khoury GA, Smadbeck J, Tamamis P, Vandris AC, Kieslich CA, Floudas CA.
ACS Synth Biol. 2014 Dec 19;3(12):855-69. doi: 10.1021/sb400168u.