RNAfdl 1.1.3 – RNA Force Directed Layout

RNAfdl 1.1.3

:: DESCRIPTION

RNAfdl is a highly flexible tool for drawing RNA secondary structures. Secondary structures can be visualized as classical secondary structure plot, circle plot, linear plot or mountain plot. RNAfdl allows manual editing and several drawing styles, as well as a fully automated conjugate gradients minimization approach to draw more complex structures without user interaction. In addition, RNAfdl allows you to incorporate non-canonical base pairs into drawings.

::DEVELOPER

RNAfdl team

:: SCREENSHOTS

RNAfdl

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 RNAfdl

:: MORE INFORMATION

Citation:

RNA secondary structure diagrams for very large molecules: RNAfdl.
Hecker N, Wiegels T, Torda AE.
Bioinformatics. 2013 Nov 15;29(22):2941-2. doi: 10.1093/bioinformatics/btt496.

forna 20150415 – RNA Secondary Structure Visualization Using a Force Directed Graph Layout

forna 20150415

:: DESCRIPTION

forna is a web-based tool for displaying RNA secondary structure which allows users to easily convert sequences and secondary structures to clean, concise and customizable visualizations.

::DEVELOPER

Peter Kerpedjiev

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • Python

:: DOWNLOAD

 forna

:: MORE INFORMATION

Citation:

forna (force-directed RNA): Simple and Effective Online RNA Secondary Structure Diagrams.
Kerpedjiev P, Hammer S, Hofacker IL.
Bioinformatics. 2015 Jun 22. pii: btv372.

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