C2G v1.2.2 – Visualize Clustering Results of multi-dimensional Flow/Mass Cytometry data

C2G v1.2.2

:: DESCRIPTION

C2G (Cluster-to-Gate) is a tool developed to generate nested 2D gating hierarchy from clustered flow and mass cytometry data.

::DEVELOPER

Peng Qiu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows
  • Matlab

:: DOWNLOAD

C2G

:: MORE INFORMATION

Citation

Yang X, Qiu P.
Automatically generate two-dimensional gating hierarchy from clustered cytometry data.
Cytometry A. 2018 Oct;93(10):1039-1050. doi: 10.1002/cyto.a.23577. Epub 2018 Sep 3. PMID: 30176185.

RFMapp 20121217 – Ribosome Flow Model Application

RFMapp 20121217

:: DESCRIPTION

The RFMapp is a graphical user interface application, enabling the prediction of fundamental features of the gene translation process, including translation rates, ribosomal densities, protein abundance levels, and the relation between all these variables.

::DEVELOPER

Tamir Tuller’s Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

 RFMapp

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Jun 15;28(12):1663-4. doi: 10.1093/bioinformatics/bts185. Epub 2012 Apr 11.
RFMapp: ribosome flow model application.
Zur H1, Tuller T.

FlipFlop 1.8.0 – Fast Lasso-based Isoform Prediction as a Flow Problem

FlipFlop 1.8.0

:: DESCRIPTION

FlipFlop is a fast method for de novo transcript discovery and abundance estimation from RNA-Seq data.

::DEVELOPER

Centre for Computational Biology

:: SCREENSHOTS

 N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R package
  • BioConductor

:: DOWNLOAD

 FlipFlop

:: MORE INFORMATION

Citation

Bioinformatics. 2014 May 9.
Efficient RNA Isoform Identification and Quantification from RNA-Seq Data with Network Flows.
Bernard E, Jacob L, Mairal J, Vert JP.