PLCT 1.0 – Determines Reconciliation Feasibility with Multiple Sampled Individuals and Loci per Species

PLCT 1.0

:: DESCRIPTION

PLCT (Partially Labeled Coalescent Tree) is a package for understanding gene tree evolution through gene duplications, losses, and coalescence with multiple samples per species.

::DEVELOPER

Yi-Chieh Wu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • NetworkX

:: DOWNLOAD

PLCT

:: MORE INFORMATION

Citation

BMC Bioinformatics, 18 (1), 292 2017 Jun 5
Reconciliation Feasibility in the Presence of Gene Duplication, Loss, and Coalescence With Multiple Individuals Per Species
Jennifer Rogers , Andrew Fishberg , Nora Youngs , Yi-Chieh Wu

FFCA 1.01 – Feasibility-based Flux Coupling Analysis of Metabolic Networks

FFCA 1.01

:: DESCRIPTION

FFCA is a Matlab based tool for flux coupling analysis. An LP solver should be installed separately and made “visible” from within Matlab. FFCA currently supports the usage of Linprog, Clp, Lindo and Glpk.

::DEVELOPER

Prof. Dr. Alexander Bockmayr

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Linux

:: DOWNLOAD

 FFCA

:: MORE INFORMATION

Citation

L. David, S.-A. Marashi, A.Larhlimi, B. Mieth, A. Bockmayr.
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks“,
BMC Bioinformatics 2011, 12:236.