Tag: Exon

ExonVisualiser – Exon Identification & Visualization in Protein Structures

ExonVisualiser

:: DESCRIPTION

ExonVisualiser is dedicated to everyone (e.g computer scientists, biotechnologists, biologists) who is interested in visualization protein regions (2D and 3D structures) encoded by particular exons.

::DEVELOPER

Krzysztof Porembski  & dr Monika Piwowar (mpiwowar@cm-uj.krakow.pl)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Bioinformation. 2012;8(25):1280-2. doi: 10.6026/97320630081280. Epub 2012 Dec 19.
ExonVisualiser – application for visualization exon units in 2D and 3D protein structures.
Piwowar M, Krzysztof P, Piotr P.

CEDER – Detection of Differentially Expressed Genes by combining significance of exons using RNA-Seq

CEDER

:: DESCRIPTION

CEDER is intended to implement a program for detecting differentially expressed genes (DEG) using RNA-Seq by combining significance of exons within a gene.

::DEVELOPER

Fengzhu Sun

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 CEDER

:: MORE INFORMATION

Citation

Wan L, Sun FZ (2011):
CEDER: Accurate detection of differentially expressed genes by combining significance of exons using RNA-Seq
(submitted to APBC2012).

ALNGG – Exon Finding by Genomic Sequence Comparison

ALNGG

:: DESCRIPTION

Alngg detects the protein coding gene by genome comparison between two species.

  1. more accurate and reliable than non-comparative genomic method
  2. not required synteny maps for running

ALNGG Online Version

 

::DEVELOPER

Osamu Gotoh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ compiler

:: DOWNLOAD

 ALNGG

:: MORE INFORMATION

Citation

Gotoh, O., Morita, M., Ichiyoshi, N., and Yada, T. (2005)
Discovery of protein coding genes through chromosome-to-chromosome sequence comparison.
Genome Informatics 2005, Yokohama, 12.19-21