SICLE 1.2 – high-throughput tool for Extracting Evolutionary Relationships from Phylogenetic Trees

SICLE 1.2

:: DESCRIPTION

SICLE (Sister Clade Extractor) is an easy to use, adaptable, and high-throughput tool to describe the nearest neighbors to a node of interest in a phylogenetic tree as well as the support value for the relationship.

::DEVELOPER

Dr. Dan DeBlasio

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX
C++ Compiler

:: DOWNLOAD

SICLE

:: MORE INFORMATION

Citation

SICLE: A high-throughput tool for extracting evolutionary relationships from phylogenetic trees
Dan DeBlasio, Jennifer Wiscaver
Genomics arXiv:1303.5785

Tarsier – Testing and Analysing RNA gene Software, Including Evolutionary Relationships

Tarsier

:: DESCRIPTION

Tarsier is a software pipeline for testing RNA gene prediction programs with genomic alignments. It automatically gathers RNA data from Rfam and genomic alignments from both UCSC and Ensembl, and executes two popular prediction programs, EvoFold and RNAz.

::DEVELOPER

Whelan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX

:: DOWNLOAD

contact with the author

:: MORE INFORMATION

PhyNav 1.0 – Reconstruct Evolutionary Relationship among Contemporary Species based on Genetic data

PhyNav 1.0

:: DESCRIPTION

PhyNav (Phylogenetic Navigator)is a tree sampling method to reconstruct phylogenetic trees from really large datasets (DNA and protein). The method combines different methods to sample good trees.

::DEVELOPER

the Center of Integrative Bioinformatics Vienna (CIBIV) headed by Arndt von Haeseler.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

PhyNav

:: MORE INFORMATION

Citation:

Le Sy Vinh, Heiko A. Schmidt and Arndt von Haeseler,
PhyNav: A novel approach to reconstruct large phylogenies,
proceedings of GfKl conference, 2004.