Phylonium 1.4 – Fast and Accurate Estimation of Evolutionary Distances

Phylonium 1.4

:: DESCRIPTION

Phylonium is a program for estimating the evolutionary distances between closely related genomes. It is much faster than alignment based approaches for phylogeny reconstruction and usually more accurate than competing alignment-free methods.

::DEVELOPER

Fabian Klötzl

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

Phylonium

:: MORE INFORMATION

Citation

Klötzl F, Haubold B.
Phylonium: fast estimation of evolutionary distances from large samples of similar genomes.
Bioinformatics. 2020 Apr 1;36(7):2040-2046. doi: 10.1093/bioinformatics/btz903. PMID: 31790149; PMCID: PMC7141870.

andi 0.13 – Estimating the Evolutionary Distance between closely related Genomes

andi 0.13

:: DESCRIPTION

andi is a  program for estimating the evolutionary distance between closely related genomes.

::DEVELOPER

Fabian Klötzl

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 andi

:: MORE INFORMATION

Citation

andi: Fast and accurate estimation of evolutionary distances between closely related genomes.
Haubold B, Klötzl F, Pfaffelhuber P.
Bioinformatics. 2014 Dec 10. pii: btu815.

Distance 1.0 – Estimation of Reversible Substitution Matrices and Evolutionary Distance

Distance 1.0

:: DESCRIPTION

Distance is a program written by Lars Arvestad that implements a least-squares method for estimating general reversible DNA substitution matrices and evolutionary distances.

::DEVELOPER

William J. Bruno and Lars Arvestad

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Complier

:: DOWNLOAD

  Distance

:: MORE INFORMATION

Citation

J Mol Evol. 1997 Dec;45(6):696-703.
Estimation of reversible substitution matrices from multiple pairs of sequences.
Arvestad L, Bruno WJ.