:: DESCRIPTION
Dizzy-Beats is a graphical Java application that builds on the established Dizzy simulator
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Dizzy-Beats: a Bayesian Evidence analysis tool for systems biology.
Aitken S, Kilpatrick AM, Akman OE.
Bioinformatics. 2015 Jan 30. pii: btv062.
:: DESCRIPTION
Given a set of peaks from (biological or technical) replicates, MSPC combines the p-values of overlapping enriched regions: users can choose a threshold on the combined significance of overlapping peaks and set a minimum number of replicates where the overlapping peaks should be present. The method allows the “rescue” of weak peaks occuring in more than one replicate and outputs a new set of enriched regions for each replicate.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Using combined evidence from replicates to evaluate ChIP-seq peaks.
Jalili V, Matteucci M, Masseroli M, Morelli MJ.
Bioinformatics. 2015 May 7. pii: btv293.
:: DESCRIPTION
IPred (Integrate gene Predictions) is a program that combines the output of ab initio and evidence based (including comparative based) gene finders to improve on the overall prediction accuracy.
::DEVELOPER
: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Genomics. 2015 Feb 26;16:134. doi: 10.1186/s12864-015-1315-9.
IPred – integrating ab initio and evidence based gene predictions to improve prediction accuracy.
Zickmann F, Renard BY
