GeneBASE – Estimate Gene-level Expression from Affymetrix Exon Arrays

GeneBASE

:: DESCRIPTION

GeneBASE (Gene-level Background Adjusted Selected probe Expression) is a freely available tool for computing Affymetrix Exon array gene-level expression estimates.

GeneBASE consists of the following two programs, ProbeEffects and ProbeSelection

::DEVELOPER

by Karen Kapur, from the Wong Lab and Yi Xing

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX / Windows

:: DOWNLOAD

GeneBASE

:: MORE INFORMATION

Citation

Kapur, K., Xing, Y., Ouyang, Z. and Wong, W.H.
Exon array assessment of gene expression.
Genome Biology, 2007 8(5).

SIMLINK 4.12 – Estimate the Power of a Proposed Linkage Study

SIMLINK 4.12

:: DESCRIPTION

SIMLINK is a computer program to estimate the probability (“power”) of detecting linkage given family history information on a set of identified pedigrees.

::DEVELOPER

Michael Boehnke and Lynn Ploughman.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

DOS/UNIX

:: DOWNLOAD

SIMLINK

:: MORE INFORMATION

Citation:

Boehnke M. and Ploughman LM.
SIMLINK: A Program for Estimating the Power of a Proposed Linkage Study by Computer Simulation. Version 4.12, April 2, 1997

FSTAT 2.9.3.2 – Estimate & Test Gene Diversities

FSTAT 2.9.3.2

:: DESCRIPTION

FSTAT is a computer package for PCs which estimates and tests gene diversities and differentiation statistics from codominant genetic markers. It computes both Nei and Weir & Cockerham families of estimators of gene diversities and F-statistics, and tests them using randomisation methods.

::DEVELOPER

Jérôme Goudet.

:: SCREENSHOTS

:: REQUIREMENTS

Windows

:: DOWNLOAD

FSTAT

:: MORE INFORMATION

LAPD – Estimate Protein Distances

LAPD

:: DESCRIPTION

LAPD estimates pairwise distances for a set of protein sequences. The output can be used in conjunction with other phylogeny programs.

::DEVELOPER

Lars Arvestad

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ windows/MacOsX
Perl

:: DOWNLOAD

LAPD Source Code

:: MORE INFORMATION

lapd is distributed under the GNU General Public License.