BAGEL 0.91 – Bayesian Analysis of Gene EssentiaLity

BAGEL 0.91

:: DESCRIPTION

BAGEL is a software for Bayesian analysis of gene knockout screens using pooled library CRISPR or RNAi.

::DEVELOPER

BAGEL  team

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Windows/Linux
  • Python

:: DOWNLOAD

 BAGEL

:: MORE INFORMATION

Citation

BAGEL: a computational framework for identifying essential genes from pooled library screens.
Hart T, Moffat J.
BMC Bioinformatics. 2016 Apr 16;17(1):164. doi: 10.1186/s12859-016-1015-8.

NEST 1.0 – Network Essentiality Scoring Tool

NEST 1.0

:: DESCRIPTION

The NEST is designed to predict the gene essentiality based on protein interaction network and gene expression or CRISPR screen results.

::DEVELOPER

X. Shirley Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

 NEST

:: MORE INFORMATION

Citation

Network analysis of gene essentiality in functional genomics experiments.
Jiang P, Wang H, Li W, Zang C, Li B, Wong YJ, Meyer C, Liu JS, Aster JC, Liu XS.
Genome Biol. 2015 Oct 30;16:239. doi: 10.1186/s13059-015-0808-9.