NoDe – Error-correcting Algorithm for 454 Pyrosequencing Reads

NoDe

:: DESCRIPTION

NoDe (Noise Detector) is a new error correction algorithm which was trained to identify those positions in 454 sequencing reads that are likely to have an error, and subsequently clusters those error-prone reads with correct reads resulting in error-free representative read.

::DEVELOPER

The Bioinformatics team of the Microbiology Unit, SCK.CEN

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 NoDe

:: MORE INFORMATION

Citation:

NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads.
Mysara M, Leys N, Raes J, Monsieurs P.
BMC Bioinformatics. 2015 Mar 15;16(1):88.

ECLIPSE 1.1 – Error Correcting Likelihoods In Pedigree Structure Estimation

ECLIPSE 1.1

:: DESCRIPTION

ECLIPSE (Error Correcting Likelihoods In Pedigree Structure Estimation) is a set of three programs (preproc, eclipse2 and eclipse3) which analyze genetic marker data for genotyping and/or pedigree errors. Using the same preprocessing program (preproc) eclipse2 analyzes data on pairs of individuals, while eclipse3 analyzes data jointly of trios.

::DEVELOPER

Elizabeth A. Thompson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 ECLIPSE

:: MORE INFORMATION