PHYPred – Identifying Phage Enzymes and Hydrolases

PHYPred

:: DESCRIPTION

The web-server PHYPred was developed to identify the phage enzymes and hydrolases based on the sequence information.

::DEVELOPER

LinDing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

PHYPred: a tool for identifying bacteriophage enzymes and hydrolases.
Ding H, Yang W, Tang H, Feng PM, Huang J, Chen W, Lin H.
Virol Sin. 2016 Aug;31(4):350-2. doi: 10.1007/s12250-016-3740-6.

LGT3State 20081223 – Detect LGT (swapping) of two non-homologous Enzymes

LGT3State 20081223

:: DESCRIPTION

LGT3State is a program for inferring lateral gene transfer (LGT) in cases where there are two non-homologous genes, where each gene performs the same function (which is essential to the cell). Thus, there are three states which may characterize an organism: (a) it encodes gene A, (b) it encodes gene B, (c), it encodes both genes A and B.

::DEVELOPER

Adi Stern

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / WIndows

:: DOWNLOAD

 LGT3State

:: MORE INFORMATION

Citation

Stern A., Mayrose I., Penn, O., Shaul S., Gophna U., Pupko T.
An Evolutionary Analysis of Lateral Gene Transfer in Thymidylate Synthase Enzymes.
Syst Biol. 2010 March; 59(2): 212–225.

EnzFitter 2 – Curve Fitting & Analysis of Enzyme Kinetics Experiments

EnzFitter 2

:: DESCRIPTION

EnzFitter is a generic curve-fitting package which has custom features designed to make it especially suitable for analysis of enzyme kinetics experiments. For example, initial rate and parameter values can be obtained with their confidence limits for single and twin substrate rate data. Built-in models include Michaelis-Menten with or without substrate inhibition, competitive, uncompetitive and mixed inhibition, ternary complex or ordered bi-bi systems and ping-pong with and without inhibition by substrates. You can easily add other models in conventional algebraic syntax.

::DEVELOPER

Biosoft

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

EnzFitter

:: MORE INFORMATION

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