Tag: Electrostatic Property

APBS 3.0.0 – Evaluat Electrostatic Properties of Nanoscale Biomolecular System

APBS 3.0.0

:: DESCRIPTION

APBS (Adaptive Poisson-Boltzmann Solver)  is a software package for modeling biomolecular solvation through solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation

::DEVELOPER

APBS Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows/ MacOsX

:: DOWNLOAD

APBS

:: MORE INFORMATION

Citation

Comput Sci Discov. 2012 Jul 26;5(1). pii: 015005.
iAPBS: a programming interface to Adaptive Poisson-Boltzmann Solver (APBS).
Konecny R, Baker NA, McCammon JA.

Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA.
Electrostatics of nanosystems: application to microtubules and the ribosome.
Proc. Natl. Acad. Sci. USA 98, 10037-10041 2001

Bluues 2.0 – Electrostatic properties of Proteins based on generalized Born radii

Bluues 2.0

:: DESCRIPTION

Bluues isa novel GB (Generalized Born) based web server to calculate numerous electrostatic features including pKa-values and surface potentials.

:: DESCRIPTION

The BioComputing UP lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Aug 15;28(16):2189-90. doi: 10.1093/bioinformatics/bts343. Epub 2012 Jun 17.
Bluues server: electrostatic properties of wild-type and mutated protein structures.
Walsh I1, Minervini G, Corazza A, Esposito G, Tosatto SC, Fogolari F.