:: DESCRIPTION
Align is a manual DNA sequence alignment editor.
::DEVELOPER
SequentiX – Digital DNA Processing
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Request a free trial license to use the full spectrum of features for one month and free of charge!
:: DESCRIPTION
CDTree is a powerful tool to aid in the classification of protein sequences and investigate their evolutionary relationships;
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH.
CDD: a conserved domain database for interactive domain family analysis.
Nucleic Acids Res. 2007;35 (Database Issue):D237-40.
:: DESCRIPTION
Se-Al is an application for creating multiple sequence alignments from nucleotide and amino acid sequences. At the moment it does not do any automatic alignments but is intended for the production of hand alignments and for preparing input for alignment programs such as CLUSTAL and phylogeny reconstruction programs such as PHYLIP and PAUP. It is particularly useful for manipulating protein coding DNA/RNA sequences.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
NDE (NEXUS Data Editor) is a program to create and edit NEXUS format data files on computers running Microsoft Windows 95/NT 4.0. The main motivation behind my writing the program was to provide an easy to use data editor similar to that provided in the Macintosh program MacClade (note that NDE has none of the data or tree analysis features of MacClade). The NEXUS format is becoming more widely used on PCs now that DOS and Windows versions of PAUP* are available for testing.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
DNA Master is a freeware DNA sequence editor and analysis package.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
N/A
:: DESCRIPTION
PDB Editor (Protein Data Bank ,PDB, File Editor) is a tool for protein crystallographers to expedite selective edit / data extraction / analysis of their PDB files. It allows the user to selectively search, select, extract and edit information in parallel.
::DEVELOPER
Jonas Lee
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
J. Lee and S.-H. Kim
PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI
Acta Cryst. (2009). D65, 399-402
:: DESCRIPTION
StrukEd is not only an editor for molecules that allows the input of chemical structures in a very comfortable way. Additionally, StrukEd can import the results of a variety of quantum-chemical methods and can visualize these results at a sophisticated level.
The Input of Molecules is supported by extensive fragment and functional groups libraries; these can easily be changed and extended on user’s demand. StrukEd checks the created structures in terms of their chemical plausibility, thus providing help for the user in order to avoid errors.
The program generates a 3D model starting from the valence bond input. According to its quality, this model can be used to visualize bond lengths, angles and torsion angles of the three-dimensional structure as well as an input for other optimization programs.
::DEVELOPER
Jörg Dettmann ,QCsoft
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
MCDL (Modular Chemical Descriptor Language) is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. The editor supports the MCDL format, in which structures are presented in compact canonical form and is capable of restoring bond orders as well as of managing atom and bond drawing overlap. A small database of cage and large cyclic fragment is used for optimal representation of difficult-to-draw molecules. The improved algorithm of the structure diagram generation can be used for other chemical notations that lack atomic coordinates (SMILES, InChI).
::DEVELOPER
Sergei Trepalin (Institute of Physiologically Active Compounds RAS)
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Molecules 2006, 11(4), 219-231; doi:10.3390/11040219
A Java Chemical Structure Editor Supporting the Modular Chemical Descriptor Language (MCDL)
Sergei V. Trepalin, Alexander V. Yarkov , Igor V. Pletnev and Andrei A. Gakh
:: DESCRIPTION
SeqPup is a biological sequence editor and analysis program. It includes links to network services and external analysis programs.
::DEVELOPER
Don Gilbert at Indiana University
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
This SeqPup program is Copyright (C) 1990-1997 by D.G. Gilbert.
All Rights are reserved.
