Tag: EC

HEC 2.0.1 – Haploid Simulation of Bacterial Communities

HEC 2.0.1

:: DESCRIPTION

HEC (Haploid Evolutionary Constructor)  is the tool for simulation of bacterial (more exactly prokaryotic) communities. It is based on the original modeling approach investigated in the Laboratory of molecular-genetic systems at the Institute of Cytology and Genetics (Novosibirsk, Russia).

::DEVELOPER

HEC Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 HEC

:: MORE INFORMATION

Citation:

Simulation of coevolution in community by using the “Evolutionary Constructor” program.
Lashin SA, Suslov VV, Kolchanov NA, Matushkin YG.
In Silico Biol. 2007;7(3):261-75.

EC – an efficient Error Correction algorithm for Short Reads

EC

:: DESCRIPTION

EC is a novel error correction algorithm and compared it with four other state-of-the-art algorithms using both real and simulated sequencing reads.

::DEVELOPER

Sanguthevar Rajasekaran

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 EC

:: MORE INFORMATION

Citation

EC: an efficient error correction algorithm for short reads.
Saha S, Rajasekaran S.
BMC Bioinformatics. 2015;16 Suppl 17:S2. doi: 10.1186/1471-2105-16-S17-S2.

annot8r 1.1.1 – BLAST based GO-EC-KEGG Annotation

annot8r 1.1.1

:: DESCRIPTION

annot8r is a tool for the annotation of protein or nucleotide sequences from non model organisms with GO terms, EC numbers and KEGG pathways. The annotation is based on BLAST similarity searches against annotated subsets of EMBL UniProt from which sequences with non-informative entries have been removed. GO, EC and KEGG annotations are saved as flat files and in a relational postgreSQL database to allow for more sophisticated searches within the results.

::DEVELOPER

Ralf Schmid and Mark Blaxter

:: REQUIREMENTS

:: DOWNLOAD

annot8r

:: MORE INFORMATION