PRE Mapper 1.0 – Searching Polycomb Response Elements (PREs) in Drosophila

PRE Mapper 1.0

:: DESCRIPTION

PRE Mapper is a bioinformatic tool written in Perl for searching Polycomb Response Elements (PREs) in Drosophila. This tool’s algorithm uses motif of PRE binding proteins and looks for motif clusters and patterns to define a PRE.

::DEVELOPER

Rakesh Mishra Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows /MacOsX
Perl

:: DOWNLOAD

PRE Mapper

:: MORE INFORMATION

Citation:

Srinivasan A, Mishra RK.
Genomic organization of Polycomb Response Elements and its functional implication in Drosophila and other insects.
J Biosci. 2020;45:12. PMID: 31965990.

i-cisTarget – Prediction of Regulatory Features and Cis-regulatory modules in Drosophila

i-cisTarget

:: DESCRIPTION

i-cisTarget is an integrative genomics method for the prediction of regulatory features (motifs and in vivo features), and cis-regulatory modules in Drosophila

::DEVELOPER

Laboratory of Computational Biology @ the Center for Human Genetics (CME), at the Faculty of Medicine

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Aug;40(15):e114. doi: 10.1093/nar/gks543. Epub 2012 Jun 20.
i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules.
Herrmann C1, Van de Sande B, Potier D, Aerts S.

QuantiFly v2.0.35 – Automated Drosophila Egg Counting

QuantiFly v2.0.35

:: DESCRIPTION

QuantiFly is a software package for automating egg counting in Drosophila genetics research.

::DEVELOPER

Dominic Waithe

:: SCREENSHOTS

::REQUIREMENTS

Windows/Linux/MacOsX
Python

:: DOWNLOAD

QuantiFly

:: MORE INFORMATION

Citation

QuantiFly: Robust Trainable Software for Automated Drosophila Egg Counting.
Waithe D, Rennert P, Brostow G, Piper MD.
PLoS One. 2015 May 18;10(5):e0127659. doi: 10.1371/journal.pone.0127659.

DeadEasy Mito-Glia – Counting of Mitotic Cells and Glial Cells in Drosophila

DeadEasy Mito-Glia

:: DESCRIPTION

DeadEasy Mito-Glia is an imageJ plug-in allows you to count automatically mitotic cells stained with PHistone3 in whole Drosophila embryos.

::DEVELOPER

Alicia Hidalgo lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/windows/MacOsX
Java
ImageJ

:: DOWNLOAD

DeadEasy Mito-Glia

:: MORE INFORMATION

Citation

Forero MG, Learte AR, Cartwright S. and Hidalgo A. (2010)
DeadEasy Mito-Glia: automatic counting of mitotic cells and glial cells in Drosophila.
PLoS One 5(5): e10557. doi:10.1371/journal.pone.0010557.

DeadEasy Caspase – Counting of Apoptotic Cells in Drosophila

DeadEasy Caspase

:: DESCRIPTION

DeadEasy Caspase is a software based on image filtering and mathematical morphology techniques, to count automatically the number of dying cells in intact fruit-fly embryos.

::DEVELOPER

Alicia Hidalgo lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/windows/MacOsX
Java
ImageJ

:: DOWNLOAD

DeadEasy Caspase

:: MORE INFORMATION

Citation

Forero MG, Pennack JA, Learte AR and Hidalgo A. (2009)
DeadEasy Caspase: automatic counting of apoptotic cells in Drosophila.
PLoS One 4(5): e5441. doi:10.1371/journal.pone.000544.