Tag: Download

BioDownloader 2.2.1.0- Download and/or Update Files from Servers

BioDownloader 2.2.1.0

:: DESCRIPTION

BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program has unique features that are specifically designed to deal with bioinformatics data files and servers (large file sets, selective file retrieval, built-in download settings repository, wizard for post- download file processing, simultaneous download of multiple files). Besides the intuitive BioDownloader’s features that allow the user to use it out-of-the-box, provides the experienced user a vast set of fine-tunning options and advanced features.

::DEVELOPER

Dunbrack Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

BioDownloader

:: MORE INFORMATION

Citation

Maxim V. Shapovalov; Adrian A. Canutescu; Roland L. Dunbrack Jr.
BioDownloader: Bioinformatics downloads and updates in a few clicks.
Bioinformatics 2007; doi: 10.1093/bioinformatics/btm120

SRAdb 1.52.0 – R tool to Query/ Download Short Read Archive

SRAdb 1.52.0

:: DESCRIPTION

SRAdb is an attempt to make queries of the metadata associated with SRA (Sequence Read Archive ) submission, study, sample, experiment and run more robust and precise, and make access to sequencing data in the SRA easier

::DEVELOPER

Jack Zhu <zhujack@mail.nih.gov>, Sean Davis @NCI

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • R package
  • BioConductor

:: DOWNLOAD

 SRAdb

:: MORE INFORMATION

Citation
BMC Bioinformatics. 2013 Jan 17;14:19. doi: 10.1186/1471-2105-14-19.
SRAdb: query and use public next-generation sequencing data from within R.
Zhu Y, Stephens RM, Meltzer PS, Davis SR.