scds 1.2.0 – In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data

scds 1.2.0

:: DESCRIPTION

scds (single cell doublet scoring) is a software of computational doublet prediction for single cell RNA sequencing data

::DEVELOPER

Kostka Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • BioConductor

:: DOWNLOAD

scds

:: MORE INFORMATION

Citation

Bioinformatics. 2019 Sep 10. pii: btz698. doi: 10.1093/bioinformatics/btz698.
scds: Computational Annotation of Doublets in Single-Cell RNA Sequencing Data.
Bais AS, Kostka D.

doublet 1.0 – Incorporate Patterns of Dipeptide Covariation to Align Protein Sequences

doublet 1.0

:: DESCRIPTION

doublet is a modified version of the Smith-Waterman algorithm that incorporates patterns of dipeptide covariation to align protein sequences.

::DEVELOPER

Computational Genomics Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  doublet

:: MORE INFORMATION

Citation:

Gavin A. Price, Gavin E. Crooks, Richard E. Green and Steven E. Brenner
Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap
Bioinformatics 21 (20): 3824-3831.