:: DESCRIPTION
HangOut is a software for a single domain with specified insertion position, cleans erroneously extended PSI-BLAST alignments to generate better profiles.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
B.H. Kim, Q. Cong, N.V. Grishin (2010)
“HangOut: generating clean PSI-BLAST profiles for domains containing long insertions“.
Bioinformatics (2010) 26 (12): 1564-1565.
:: DESCRIPTION
ArchSchema is a java program that generates dynamic plots of related Pfam domain architectures. The protein sequences having each architecture can be displayed on the plot and separately listed. Where there is 3D structural information in the PDB, the relevant PDB codes can be shown on the plot. Sequences can be be filtered by organism, or the output can be limited to just those protein sequences for which there is structural information in the PDB.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2010 May 1;26(9):1260-1. Epub 2010 Mar 17.
ArchSchema: a tool for interactive graphing of related Pfam domain architectures.
Tamuri AU, Laskowski RA.
:: DESCRIPTION
DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins. Its key features are
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
K. Hinsen
Analysis of domain motions by approximate normal mode calculations
Proteins 33(3), 417-429 (1998)
:: DESCRIPTION
CDTree is a powerful tool to aid in the classification of protein sequences and investigate their evolutionary relationships;
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH.
CDD: a conserved domain database for interactive domain family analysis.
Nucleic Acids Res. 2007;35 (Database Issue):D237-40.
