Tag: Domain level

COPRED – Prediction of Fold, GO Molecular Function and Functional Residues at the Domain Level

COPRED

:: DESCRIPTION

COPRED is a web server for the concomitant prediction of fold, molecular function and functional sites at the domain level, based on a methodology for domain molecular function prediction and a resource of domain functional annotations previously developed and benchmarked.

::DEVELOPER

Computational Systems Biology Group (CNB-CSIC)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Bioinformatics. 2013 Jul 15;29(14):1811-2. doi: 10.1093/bioinformatics/btt283. Epub 2013 May 29.
COPRED: prediction of fold, GO molecular function and functional residues at the domain level.
López D1, Pazos F.

ProDGe 20110509 – Investigate Protein-protein Interactions at the Domain level

ProDGe 20110509

:: DESCRIPTION

ProDGe (Protein Domain Gene) visualizes existing and suggests novel domaindomain interactions and protein-protein interactions at the domain level. The comprehensive dataset behind ProDGe consists of protein, domain and interaction information for both layers, collected and combined appropriately from UniProt, Pfam, DOMINE and IntAct. Based on known domain interactions, ProDGe suggests novel protein interactions and assigns them to four confidence classes, depending on the reliability of the underlying domain interaction. Furthermore, ProDGe is able to identify potential homologous interaction partners in other species, which is particularly helpful when investigating poorly annotated species.

::DEVELOPER

the Center for Bioinformatics Tübingen (Zentrum für Bioinformatik Tübingen, ZBIT).

:: SCREENSHOTS

ProDGe

:: REQUIREMENTS

  • Linux/ WIndows/MacOsX
  • Java

:: DOWNLOAD

  ProDGe

:: MORE INFORMATION

Citation

Büchel, Finja, Wrzodek, Clemens, Mittag, Florian, Dr?ger, Andreas, Schr?der, Adrian, and Zell, Andreas.
ProDGe: investigating protein-protein interactions at the domain level.
Nature Precedings (2011)