DnaSP 5.10.01 – Analysis of Nucleotide Polymorphism from Aligned DNA Sequence Data

DnaSP 5.10.01

:: DESCRIPTION

DnaSP (DNA Sequence Polymorphism) is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data. DnaSP can estimate several measures of DNA sequence variation within and between populations (in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon positions), as well as linkage disequilibrium, recombination, gene flow and gene conversion parameters.

::DEVELOPER

J. Rozas, P. Librado, J. C. Sánchez-DelBarrio, X. Messeguer and R. Rozas
Molecular Evolutionary Genetics Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

DnaSP

:: MORE INFORMATION

Citation

Librado, P. and Rozas, J. 2009.
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data.
Bioinformatics 25: 1451-1452 | doi: 10.1093/bioinformatics/btp187.

DNA2ABC 1.0.1 – Turn DNA Sequences into Musical Sequences

DNA2ABC 1.0.1

:: DESCRIPTION

dna2abc turns DNA sequences into musical sequences. The key feature is the rule editor; a rule is a regular expression paired with a Tcl script. dna2abc scans a DNA sequence, testing each regular expression: if it matches, the Tcl script is run.

::DEVELOPER

Phil Mercurio

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

DNA2ABC

:: MORE INFORMATION

dna2abc is released under the GPL (see License.txt in the release). You’re free to do pretty much anything with it except sell it or modify it without sharing your modifications.

ProteinMusic 1.1 – Convert DNA Sequences into Music

ProteinMusic 1.1

:: DESCRIPTION

ProteinMusic is a Java program converting DNA sequences into music.

::DEVELOPER

Andreas. Karwath

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java

:: DOWNLOAD

ProteinMusic

:: MORE INFORMATION

Citation:

King, R.D. & Angus, C.G. (1996)
PM: Protein Music.
CABIOS. 12, pages 251-252

MRSfinder 1.0 – Find MAR Recognition Signature in DNA Sequence

MRSfinder 1.0

:: DESCRIPTION

MRSfinder is a program to find the Matrix Attachment Region (MAR) Recognition Signature in DNA sequence. The Matrix Attachment Region (MAR) Recognition Signature (MRS), defined by van Drunen et al. (Nucleic Acids Research 1999, 27:2924-30), has been proposed as a motif characteristic of MAR. The signature is composed of two motifs (AATAAYAA and AWWRTAANNWWGNNNC (one mis-match allowed)) which lie with 200bp of each other, on either strand of the DNA duplex. MRSfinder.pl searches a user defined FASTA sequence file for all instances of the MRS and reports their positions.

::DEVELOPER

The Blaxter Lab at The Institute of Evolutionary Biology University of Edinburgh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

MRSfinder

:: MORE INFORMATION

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