:: DESCRIPTION
Halvade is a mapreduce implementation of the best practice DNA-seq pipeline
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Halvade: scalable sequence analysis with MapReduce.
Decap D, Reumers J, Herzeel C, Costanza P, Fostier J.
Bioinformatics. 2015 Mar 26. pii: btv179.
:: DESCRIPTION
ZINBA (Zero-Inflated Negative Binomial Algorithm) is a computational and statistical framework used to call regions of the genome enriched for sequencing reads originating from a diverse array of biological experiments.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions.
Rashid NU, Giresi PG, Ibrahim JG, Sun W, Lieb JD.
Genome Biol. 2011 Jul 25;12(7):R67. doi: 10.1186/gb-2011-12-7-r67.
