RIPCAL 2.0 – Analysis of RIP in Fungal Genomic DNA Repeats

RIPCAL 2.0

:: DESCRIPTION

RIPCAL is a bioinformatics tool for the analysis of repeat-induced point mutation (RIP) of fungi.

::DEVELOPER

Dr James Hane

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Perl
:: DOWNLOAD

 RIPCAL

:: MORE INFORMATION

Citation

BMC Genomics. 2010 Nov 24;11:655. doi: 10.1186/1471-2164-11-655.
In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes.
Hane JK1, Oliver RP.

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences.
Hane JK, Oliver RP.
BMC Bioinformatics. 2008 Nov 12;9:478. doi: 10.1186/1471-2105-9-478.

REannotate – Automated Molecular Paleontology of Complex DNA Repeats

REannotate

:: DESCRIPTION

REannotate is ready to process existing annotation for automated evolutionary analysis of all types of complex repeats in any genome.

::DEVELOPER

Vini Pereira

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 REannotate

:: MORE INFORMATION

Citation:

Vini Pereira
Automated paleontology of repetitive DNA with REANNOTATE
BMC Genomics 2008, 9:614

OMWSA – Detection of DNA repeats using moving window Spectral Analysis

OMWSA

:: DESCRIPTION

OMWSA (optimized moving window spectral analysis) is a new method and a visualization tool for detecting DNA repeats in a 2D plane of location and frequency by using optimized moving window spectral analysis.

::DEVELOPER

 Hong Yan , Signal Processing Lab at City University of Hong Kong

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows

:: DOWNLOAD

 OMWSA

:: MORE INFORMATION

Citation:

Liping Du, Hongxia Zhou and Hong Yan
OMWSA: detection of DNA repeats using moving window spectral analysis
Bioinformatics (2007) 23 (5): 631-633.