iDNA-ABT is an advanced deep learning model that utilizes adaptive embedding based on bidirectional transformers for language understanding (BERT) together with a novel transductive information maximization (TIM) loss.
DMEAS is a user-friendly DNA methylation analysis tool for DNA methylation pattern extraction, DNA methylation level estimation, DNA methylation entropy analysis and multi-sample comparison. It was developed in order to assess the DNA methylation variations for a given genomic locus or genome-wide methylation data.
MethLAB provides a graphical user interface (GUI) to facilitate analysis of DNA methylation microarray data, allowing users with no experience using statistical software to implement flexible and powerful analyses of array-based DNA methylation data.
BEclear enables researchers to identify those portions of the data that deviate statistically significant from the remaining data and to replace these portions by typical values reconstructed from neighboring data entries based on latent factor models.
RnBeads is the first software tool that implements a comprehensive workflow for analyzing DNA methylation data in the context of large cohort studies. Its functionality comprises data normalization, quality control, probe and sample filtering, handing of batch effects, global DNA methylation analysis, detection of differentially methylated regions and interpretation by statistical enrichment analysis.
BiQ Analyzer is a software tool for easy visualization and quality control of DNA methylation data from bisulfite sequencing.
BiQAnalyzer HT is the major upgrade of the popular BiQAnalyzer tool specifically designed to aid the analysis of high-throughput bisulfite amplicon sequencing data.
BiQ Analyzer HiMod is the major upgrade of the popular BiQAnalyzer HT tool specifically designed to aid the analysis of high-throughput bisulfite amplicon sequencing data.
DeepMethyl is a web server for predicting the DNA Methylation State of CpG Dinucleotide using features inferred from three-dimensional genome topology (based on Hi-C) and DNA sequence patterns.
FadE is a software package which was designed to determine the methylation parameter at each cytosine or cytosine-guanine position in the human genome. FadE uses color reads produced by the SOLiD sequencer.
