Pydna 3.1.3 – Tool for DNA Assembly Strategies using Python

Pydna 3.1.3

:: DESCRIPTION

Pydna is an extensible, free and open source Python library for simulating basic molecular biology DNA unit operations such as restriction digestion, ligation, PCR, primer design, Gibson assembly and homologous recombination.

::DEVELOPER

Pydna team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/linux
  • Python

:: DOWNLOAD

  Pydna

:: MORE INFORMATION

Citation

Pydna: a simulation and documentation tool for DNA assembly strategies using python.
Pereira F, Azevedo F, Carvalho Â, Ribeiro GF, Budde MW, Johansson B.
BMC Bioinformatics. 2015 May 2;16(1):142.

SR-ASM – DNA Assembly of the Short Sequences coming from 454 sequencer

SR-ASM

:: DESCRIPTION

SR-ASM (Short Reads ASseMbly) algorithm is designed for DNA assembly of the short sequences coming from 454 sequencers.

::DEVELOPER

The Bioinformatics Group, Poznan University of Technology.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SR-ASM

:: MORE INFORMATION

Citation

Comput Biol Chem. 2009 Jun;33(3):224-30. Epub 2009 May 3.
Whole genome assembly from 454 sequencing output via modified DNA graph concept.
Blazewicz J, Bryja M, Figlerowicz M, Gawron P, Kasprzak M, Kirton E, Platt D, Przybytek J, Swiercz A, Szajkowski L.