:: DESCRIPTION
CladeAge is a program that can be used for specifying fossil calibrations on phylogenies when an estimate of a fossil sampling rate is available.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
motifDiverge is a software package implementing a statistical model for regulatory divergence based on transcription factor binding site motifs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Stat Interface. 2015;8(4):463-476.
motifDiverge: a model for assessing the statistical significance of gene regulatory motif divergence between two DNA sequences.
Kostka D, Friedrich T, Holloway AK, Pollard KS.
:: DESCRIPTION
ASD (Amplitude Spectrum Distance) is a novel way of comparing protein fragments based on the discrete Fourier transform of their C(α) distance matrix.
::DEVELOPER
Clovis Galliez (clovis.galiez@inria.fr)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Amplitude spectrum distance: measuring the global shape divergence of protein fragments.
Galiez C, Coste F.
BMC Bioinformatics. 2015 Aug 14;16:256. doi: 10.1186/s12859-015-0693-y.
:: DESCRIPTION
CITE computes a Confidence InTerval Estimate from a substitution and a mutation rate.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Mol Biol Evol. 2001 Jul;18(7):1157-60.
Statistics of divergence times.
Haubold B, Wiehe T.
:: DESCRIPTION
Convergence is a software for calculation of posterior convergent and divergent substitution probabilities and their expected counts, using posterior integration and amino-acid substitution models: “codeML-ancestral”
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
Citation
Evidence for an ancient adaptive episode of convergent molecular evolution.
Castoe TA, de Koning AP, Kim HM, Gu W, Noonan BP, Naylor G, Jiang ZJ, Parkinson CL, Pollock DD.
Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8986-91. Epub 2009 Apr 28.