Tag: Disordered Region

DeepIDP-2L – Protein intrinsically Disordered Region Prediction

DeepIDP-2L

:: DESCRIPTION

DeepIDP-2L is a web server for protein intrinsically disordered region prediction by combining convolutional attention network and hierarchical attention network

::DEVELOPER

Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Tang YJ, Pang YH, Liu B.
DeepIDP-2L: protein intrinsically disordered region prediction by combining convolutional attention network and hierarchical attention network.
Bioinformatics. 2021 Dec 2:btab810. doi: 10.1093/bioinformatics/btab810. Epub ahead of print. PMID: 34864847.

FoldUnfold – Prediction of Disordered Regions in Protein Chain

FoldUnfold

:: DESCRIPTION

FoldUnfold is a web server for the prediction of disordered regions in protein chain.

::DEVELOPER

the BioInformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

FoldUnfold: web server for the prediction of disordered regions in protein chain.
Galzitskaya OV, Garbuzynskiy SO, Lobanov MY.
Bioinformatics. 2006 Dec 1;22(23):2948-9. Epub 2006 Oct 4.

DISpro 1.0 – Prediction of Disordered Regions from Protein Sequences

DISpro 1.0

:: DESCRIPTION

DISpro uses a 1D-RNN to predict the probablity that residues are disorder. The probabilities are also thresholded at probablity .5 to make a hard classification. The input to DISpro is the sequence profile, predicted secondary structure, and predicted relative solvent accesiblity.

::DEVELOPER

Institute for Genomics and Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  DISpro

:: MORE INFORMATION

Citation:

J. Cheng, M. Sweredoski, & P. Baldi.
Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data.
Data Mining and Knowledge Discovery, vol. 11, no. 3, pp. 213-222, (2005).